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 Marine Biomedicine and Environmental Sciences | Alumni | Kristy Larkin Lidie
Kristy Larkin Lidie

Mentor: Dr. Fran Van Dolah

Graduated: 2007
Education:
B.S., Coastal Carolina Univ 1999

Postdoctoral: Center for Marine Biotechnolgy, Baltimore, MD

Research
Genome-wide functional analysis studies in Red Tide dinoflagellate Karenia brevis including sequencing of cDNA libraries, Suppressive Subtractive Hybridization (SSH) and the development of microarrays for detection of differentially expressed genes.

Publications
Lidie, K.B and Van Dolah, F.M. (2006) Splice leader trans-splicing in Karenia brevis: Insights into gene regulation in a dinoflagellate (submitted)

Van Dolah, F.M., Lidie, K.B., Morey, J.M., Brunelle, S.A., Ryan, J.C., Monroe, E.A., Haynes, B.L. (2006) Microarray Analysis of Diurnal and Circadian Regulated Genes in the Florida Red Tide Dinoflagellate, Karenia brevis (submitted)

Nosenko, T., Lidie K., Van Dolah, F.M., Lindquist, E., Cheng, J.F., and Bhattacharya, D. (2006) Chimeric Plastid Proteome in the Florida “Red Tide” dinoflagellate Karenia brevis. Mol Biol and Evol (Advance Access published on July 28, 2006).

Yoon, H.S., Hackett, J.D., Van Dolah F.M., Nosenko, T., Lidie K., and Bhattacharya , D. (2005) Tertiary Endosymbiosis Driven Genome Evolution in Dinoflagellate Algae. Mol Biol and Evol 22(5):1-10.

Lidie, K.L., Ryan, J.C., Barbier, M., and Van Dolah, F.M. (2005) Gene Expression in the Florida Red Tide Dinoflagellate Karenia brevis: Analysis of an Expressed Sequence Tag (EST) Library and Development of a DNA Microarray. Marine Biotechnology 7:1-14.

Presentations
Lidie, K.B. and Van Dolah, F.M. (2006) Functional genomics in the Florida Red Tide dinoflagellate Karenia brevis: Insights into gene regulation following acute and chronic stress. Presented at the ASLO Summer Meeting.

Lidie, K.B. and Van Dolah, F.M. (2006) Characterization of gene expression networks in response to nutrient limitation in the red tide dinoflagellate Karenia brevis. Presented at the Plant and Animal Genome Conference.

Lidie, K.B., Ryan, J.C., and Van Dolah, F.M. (2005) Gene Expression in the Dinoflagellate Karenia brevis: Analysis of an Expressed Sequence Tag (EST) Library and Development of an Oligonucleotide Microarray. Presented at the International Microbial Genome Conference.

Lidie, K.B., Ryan, J.C., and Van Dolah, F.M. (2004) Development of a DNA Microarray and Microarray Analysis of Diurnal and Circadian-Regulated Genes in the Florida Red Tide Dinoflagellate Karenia brevis. MUSC Student Research Day. First place award for use of Bioinformatics

Lidie, K.B., Ryan, J.C., and Van Dolah, F.M. (2004) Gene Expression in the Dinoflagellate Karenia brevis: Analysis of an Expressed Sequence Tag (EST) Library and Development of an Oligonucleotide Microarray. Presented at the 56th Annual Meeting of the Society of Protozoologists. Award for Excellence in student presentations

Lidie, K, F. Van Dolah, M. Barbier, J. Tyler, and J. Ryan (2003) Analysis of Expressed Sequence Tags (ESTs) from the Dinoflagellate Karenia brevis. Presented at the 2003 Harmful Algal Bloom (HAB) Symposium.

Awards

Second Place Oral Presentation PhD Session VIII, MUSC Student Research Day 2006

First place award for use of Bioinformatics
Lidie, K.B., Ryan, J.C., and Van Dolah, F.M. (2004) Development of a DNA Microarray and Microarray Analysis of Diurnal and Circadian-Regulated Genes in the Florida Red Tide Dinoflagellate Karenia brevis. MUSC Student Research Day.

Award for Excellence in student presentations
Lidie, K.B., Ryan, J.C., and Van Dolah, F.M. (2004) Gene Expression in the Dinoflagellate Karenia brevis: Analysis of an Expressed Sequence Tag (EST) Library and Development of an Oligonucleotide Microarray. Presented at the 56th Annual Meeting of the Society of Protozoologists.

 
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