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Mass Spectrometry Facility


  1. Williams GR, Bethard JR, Berkaw MN, Nagel AK, Luttrell LM, Ball LE. Exploring G protein-coupled receptor signaling networks using SILAC-based phosphoproteomics. Methods. 2015 Jul 6. pii: S1046-2023(15)30010-4. doi: 10.1016/j.ymeth.2015.06.022. [Epub ahead of print] PMID:26160508
  2. Uys JD, McGuier NS, Gass JT, Griffin WC 3rd, Ball LE, Mulholland PJ. Chronic intermittent ethanol exposure and withdrawal leads to adaptations in nucleus accumbens core postsynaptic density proteome and dendritic spines. Addict Biol. 2015 Mar 17. doi: 10.1111/adb.12238. [Epub ahead of print]PMID:25787124
  3. Drake RR, Ball L. Unique to this volume is the subsequent focus of individual chapters on what is known about glycosylation in relation to specific organ sites of cancer. Preface.Adv Cancer Res. 2015;126:xiii-xiv. doi: 10.1016/S0065-230X(15)00022-6. No abstract available. PMID:25727154
  4. Drake RR, Jones EE, Powers TW, Nyalwidhe JO. Altered glycosylation in prostate cancer. Adv Cancer Res. 2015;126:345-82. doi: 10.1016/bs.acr.2014.12.001. Epub 2015 Feb PMID:25727153
  5. Drake RR. Glycosylation and cancer: moving glycomics to the forefront Adv Cancer Res. 2015;126:1-10. doi: 10.1016/bs.acr.2014.12.002. Epub 2015 Feb 7.PMID:25727144
  6. Nagel AK, Ball LE.O-GlcNAc modification of the runt-related transcription factor 2 (Runx2) links osteogenesis and nutrient metabolism in bone marrow mesenchymal stem cells.Mol Cell Proteomics. 2014 Dec;13(12):3381-95. doi: 10.1074/mcp.M114.040691. Epub 2014 Sep PMID:25187572
  7. Nagel AK, Ball LE O-GlcNAc transferase and O-GlcNAcase: achieving target substrate specificity. Amino Acids. 2014 Oct;46(10):2305-16. doi: 10.1007/s00726-014-1827-7. Epub 2014 Aug 31.PMID:25173736
  8. Prakasam A, Ghose S, Oleinik NV, Bethard JR, Peterson YK, Krupenko NI, Krupenko SA JNK1/2 regulate Bid by direct phosphorylation at Thr59 in response to ALDH1L1.Cell Death Dis. 2014 Jul 31;5:e1358. doi:10.1038/cddis.2014.316.PMID:25077544
  9. Qanungo S, Uys JD, Manevich Y, Distler AM, Shaner B, Hill EG, Mieyal JJ, Lemasters JJ, Townsend DM, Nieminen AL N-acetyl-L-cysteine sensitizes pancreatic cancers to gemcitabine by targeting the NFκB pathway..Biomed Pharmacother. 2014 Sep;68(7):855-64. doi: 10.1016/j.biopha.2014.08.007. Epub 2014 Aug 28.PMID:25257100
  10. Rachidi S, Sun S, Wu BX, Jones E, Drake RR, Ogretmen B, Cowart A, Clarke CJ, Hannun YA, Chiosis G, Liu B, Li Z Endoplasmic reticulum heat shock protein gp96 maintains liver homeostasis and promotes hepatocellular carcinogenesis. J Hepatol. 2014 Nov 22. pii: S0168-8278(14)00854-X. doi: 10.1016/j.jhep.2014.11.010. PMID:25463537
  11. Nowling TK, Mather AR, Thiyagarajan T, Hernández-Corbacho MJ, Powers TW, Jones EE, Snider AJ, Oates JC, Drake RR, Siskind LJ Renal Glycosphingolipid Metabolism Is Dysfunctional in Lupus Nephritis.. J Am Soc Nephrol. 2014 Sep 30. pii: ASN.2014050508 PMID:25270066
  12. Zhang J, Ye ZW, Gao P, Reyes L, Jones EE, Branham-O'Connor M, Blumer JB, Drake RR, Manevich Y, Townsend DM, Tew KD. Glutathione S-transferase P influences redox and migration pathways in bone marrow. PLoS One. 2014 Sep 12;9(9):e107478. doi: 10.1371/journal.pone.0107478. eCollection 2014. PMID:25216273
  13. Powers TW, Neely BA, Shao Y, Tang H, Troyer DA, Mehta AS, Haab BB, Drake RR MALDI imaging mass spectrometry profiling of N-glycans in formalin-fixed paraffin embedded clinical tissue blocks and tissue microarrays..PLoS One. 2014 Sep 3;9(9):e106255. doi: 10.1371/journal.pone.0106255. eCollection 2014.PMID:25184632
  14. Jones EE, Dworski S, Canals D, Casas J, Fabrias G, Schoenling D, Levade T, Denlinger C, Hannun YA, Medin JA, Drake RR.On-tissue localization of ceramides and other sphingolipids by MALDI mass spectrometry imaging.Anal Chem. 2014 Aug 19;86(16):8303-11. doi: 10.1021/ac501937d. Epub 2014 Aug 8.PMID:25072097
  15. Baatz JE, Newton DA, Riemer EC, Denlinger CE, Jones EE, Drake RR, Spyropoulos DD Cryopreservation of viable human lung tissue for versatile post-thaw analyses and culture..In Vivo. 2014 Jul-Aug;28(4):411-23.PMID:24982205
  16. God JM, Zhao D, Cameron CA, Amria S, Bethard JR, Haque A Disruption of HLA Class II Antigen Presentation in Burkitt Lymphoma: Implication of a 47 kDa Acid Labile Protein in CD4+ T Cell Recognition..Immunology. 2014 Mar 15. doi: 10.1111/imm.12281. [Epub ahead of print]PMID:24628049
  17. Drake RR, Kislinger T The proteomics of prostate cancer exosomes..Expert Rev Proteomics. 2014 Apr;11(2):167-77. doi: 10.1586/14789450.2014.890894. Epub 2014 Feb 25.
  18. Jones EE, Powers TW, Neely BA, Cazares LH, Troyer DA, Parker AS, Drake RR MALDI imaging mass spectrometry profiling of proteins and lipids in clear cell renal cell carcinoma. Proteomics. 2014 Apr;14(7-8):924-35. doi: 10.1002/pmic.201300434. Epub 2014 Mar 3.PMID:24497498
  19. Hart GW, Ball LE.Post-translational modifications: a major focus for the future of proteomics. Mol Cell Proteomics. 2013 Dec;12(12):3443. doi: 10.1074/mcp.E113.036491. Epub 2013 Nov 25. No abstract available. PMID:24277940
  20. Cheng JC, Bai A, Beckham TH, Marrison ST, Yount CL, Young K, Lu P, Bartlett AM, Wu BX, Keane BJ, Armeson KE, Marshall DT, Keane TE, Smith MT, Jones EE, Drake RR Jr, Bielawska A, Norris JS, Liu X.Radiation-induced acid ceramidase confers prostate cancer resistance and tumor relapse.J Clin Invest. 2013 Oct 1;123(10):4344-58. doi: 10.1172/JCI64791. Epub 2013 Sep 16.PMID:24091326
  21. Nyalwidhe JO, Betesh LR, Powers TW, Jones EE, White KY, Burch TC, Brooks J, Watson MT, Lance RS, Troyer DA, Semmes OJ, Mehta A, Drake RR. Increased Bisecting N-Acetylglucosamine and Decreased Branched Chain Glycans of N-linked Glycoproteins in Expressed Prostatic Secretions Associated with Prostate Cancer Progression. Proteomics Clin Appl. 2013 Jun 17. doi: 10.1002/prca.201200134. [Epub ahead of print] PMID: 23775902
  22. Powers TW, Jones EE, Betesh LR, Romano PR, Gao P, Copland JA, Mehta AS, Drake RR Matrix assisted laser desorption ionization imaging mass spectrometry workflow for spatial profiling analysis of N-linked glycan expression in tissues..Anal Chem. 2013 Oct 15;85(20):9799-806. doi: 10.1021/ac402108x. Epub 2013 Oct 3.PMID:24050758
  23. Nyalwidhe JO, Betesh LR, Powers TW, Jones EE, White KY, Burch TC, Brooks J, Watson MT, Lance RS, Troyer DA, Semmes OJ, Mehta A, Drake RR Increased bisecting N-acetylglucosamine and decreased branched chain glycans of N-linked glycoproteins in expressed prostatic secretions associated with prostate cancer progression..Proteomics Clin Appl. 2013 Jun 17. doi: 10.1002/prca.201200134. [Epub ahead of print]PMID:23775902
  24. Leymarie N, Griffin PJ, Jonscher K, Kolarich D, Orlando R, McComb M, Zaia J, Aguilan J, Alley WR, Altmann F, Ball LE, Basumallick L, Bazemore-Walker CR, Behnken H, Blank MA, Brown KJ, Bunz SC, Cairo CW, Cipollo JF, Daneshfar R, Desaire H, Drake RR, Go EP, Goldman R, Gruber C, Halim A, Hathout Y, Hensbergen PJ, Horn DM, Hurum D, Jabs W, Larson G, Ly M, Mann BF, Marx K, Mechref Y, Meyer B, Möginger U, Neusüss C, Nilsson J, Novotny MV, Nyalwidhe JO, Packer NH, Pompach P, Reiz B, Resemann A, Rohrer JS, Ruthenbeck A, Sanda M, Schulz JM, Schweiger-Hufnagel U, Sihlbom C, Song E, Staples GO, Suckau D, Tang H, Thaysen-Andersen M, Viner RI, An Y, Valmu L, Wada Y, Watson M, Windwarder M, Whittal R, Wuhrer M, Zhu Y, Zou C. Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: the ABRF Glycoprotein Research Multi-Institutional Study 2012. Mol Cell Proteomics. 2013 Jun 13. PMID: 23764502
  25. Nagel AK, Schilling M, Comte-Walters S, Berkaw MN, Ball LE. Identification of O-linked N-acetylglucosamine (O-GlcNAc)-modified osteoblast proteins by electron transfer dissociation tandem mass spectrometry reveals proteins critical for bone formation. Mol Cell Proteomics. 2013 Apr;12(4):945-55. doi: 10.1074/mcp.M112.026633. Epub 2013 Feb 26. PMID: 23443134
  26. Liu Y, Conaway L, Rutherford Bethard J, Al-Ayoubi AM, Thompson Bradley A, Zheng H, Weed SA, Eblen ST. Phosphorylation of the alternative mRNA splicing factor 45 (SPF45) by Clk1 regulates its splice site utilization, cell migration and invasion.Nucleic Acids Res. 2013 May 1;41(9):4949-62. doi: 10.1093/nar/gkt170. Epub 2013 Mar 21.PMID:23519612 [PubMed - in process]
  27. Roper S, Zemskova M, Neely BA, Martin A, Gao P, Jones EE, Kraft AS, Drake RR. Targeted Glycoprotein Enrichment and Identification in Stromal Cell Secretomes using Azido Sugar Metabolic Labeling. Proteomics Clin Appl. 2013 May 18. doi: 10.1002/prca.201300006. [Epub ahead of print] PMID: 23687070
  28. Principe S, Jones EE, Kim Y, Sinha A, Nyalwidhe JO, Brooks J, Semmes OJ, Troyer DA, Lance RS, Kislinger T, Drake RR.In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Proteomics. 2013 May;13(10-11):1667-71. doi: 10.1002/pmic.201200561. Epub 2013 Apr 23. PMID:23533145
  29. Beckham TH, Lu P, Jones EE, Marrison T, Lewis CS, Cheng JC, Ramshesh VK, Beeson G, Beeson CC, Drake RR, Bielawska A, Bielawski J, Szulc ZM, Ogretmen B, Norris JS, Liu X. LCL124, a cationic analog of ceramide, selectively induces pancreatic cancer cell death by accumulating in mitochondria. J Pharmacol Exp Ther. 2013 Jan;344(1):167-78. doi: 10.1124/jpet.112.199216. Epub 2012 Oct 18. PMID:23086228






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