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Mass Spectrometry Facility

Publications

  1. Kim MJ, Vargas MR, Harlan BA, Killoy KM, Ball LE, Comte-Walters S, Gooz M, Yamamoto Y, Beckman JS, Barbeito L, Pehar M. Nitration and Glycation Turn Mature NGF into a Toxic Factor for Motor Neurons: A Role for p75NTR and RAGE Signaling in ALS. Antioxid Redox Signal. 2017 Jun 26. doi: 10.1089/ars.2016.6966. [Epub ahead of print] PMID:2853742
  2. Nimitvilai S, Uys JD, Woodward JJ, Randall PK, Ball LE, Williams RW, Jones BC, Lu L, Grant KA, Mulholland PJ. Orbitofrontal Neuroadaptations and Cross-Species Synaptic Biomarkers in Heavy-Drinking Macaques. J Neurosci. 2017 Mar 29;37(13):3646-3660. doi: 10.1523/JNEUROSCI.0133-17.2017. Epub 2017 Mar 7. PMID:28270566
  3. Wang X, Yuan ZF, Fan J, Karch KR, Ball LE, Denu JM, Garcia BA. A novel quantitative mass spectrometry platform for determining protein O-GlcNAcylation dynamics. Mol Cell Proteomics. 2016 Apr 25. pii: mcp.O115.049627.
  4. Song JH, Padi SK, Luevano LA, Minden MD, DeAngelo DJ, Hardiman G, Ball LE, Warfel NA, Kraft AS. Insulin receptor substrate 1 is a substrate of the Pim protein kinases. Oncotarget. 2016 Mar 4. doi: 10.18632/oncotarget.7918. PMID:26956053
  5. Pehar M, Ball LE, Sharma DR, Harlan BA, Comte-Walters S, Neely BA, Vargas MR. Changes in Protein Expression and Lysine Acetylation Induced by Decreased Glutathione Levels in Astrocytes. Mol Cell Proteomics. 2016 Feb;15(2):493-505. doi: 10.1074/mcp.M115.049288. Epub 2015 Oct 20. PMID:26486419
  6. Neely BA, Wilkins CE, Marlow LA, Malyarenko D, Kim Y, Ignatchenko A, Sasinowska H, Sasinowski M, Nyalwidhe JO, Kislinger T, Copland JA, Drake RR. Proteotranscriptomic Analysis Reveals Stage Specific Changes in the Molecular Landscape of Clear-Cell Renal Cell Carcinoma. PLoS One. 2016 Apr 29;11(4):e0154074. doi: 10.1371/journal.pone.0154074. eCollection 2016. PMID:27128972
  7.  Williams GR, Bethard JR, Berkaw MN, Nagel AK, Luttrell LM, Ball LEExploring G protein-coupled receptor signaling networks using SILAC-based phosphoproteomics. Methods. 2015 Jul 6. pii: S1046-2023(15)30010-4. doi: 10.1016/j.ymeth.2015.06.022. [Epub ahead of print]PMID:26160508
  8. Uys JD, McGuier NS, Gass JT, Griffin WC 3rd, Ball LE, Mulholland PJ. Chronic intermittent ethanol exposure and withdrawal leads to adaptations in nucleus accumbens core postsynaptic density proteome and dendritic spines. Addict Biol. 2015 Mar 17. doi: 10.1111/adb.12238. PMID:25787124
  9. Whitaker RM, Korrapati MC, Stallons LJ, Jesinkey SR, Arthur JM, Beeson CC, Zhong Z, Schnellmann RG. Urinary ATP Synthase Subunit β Is a Novel Biomarker of Renal Mitochondrial Dysfunction in Acute Kidney Injury. Toxicol Sci. 2015 May;145(1):108-17. doi: 10.1093/toxsci/kfv038. Epub 2015 Feb PMID:25666834
  10. Nagel AK, Ball LE.O-GlcNAc modification of the runt-related transcription factor 2 (Runx2) links osteogenesis and nutrient metabolism in bone marrow mesenchymal stem cells.Mol Cell Proteomics. 2014 Dec;13(12):3381-95. doi: 10.1074/mcp.M114.040691. Epub 2014 Sep PMID:25187572
  11. Nagel AK, Ball LE O-GlcNAc transferase and O-GlcNAcase: achieving target substrate specificity. Amino Acids. 2014 Oct;46(10):2305-16. doi: 10.1007/s00726-014-1827-7. Epub 2014 Aug 31.PMID:25173736
  12. Prakasam A, Ghose S, Oleinik NV, Bethard JR, Peterson YK, Krupenko NI, Krupenko SA JNK1/2 regulate Bid by direct phosphorylation at Thr59 in response to ALDH1L1.Cell Death Dis. 2014 Jul 31;5:e1358. doi:10.1038/cddis.2014.316.PMID:25077544
  13. Qanungo S, Uys JD, Manevich Y, Distler AM, Shaner B, Hill EG, Mieyal JJ, Lemasters JJ, Townsend DM, Nieminen AL N-acetyl-L-cysteine sensitizes pancreatic cancers to gemcitabine by targeting the NFκB pathway..Biomed Pharmacother. 2014 Sep;68(7):855-64. doi: 10.1016/j.biopha.2014.08.007. Epub 2014 Aug 28.PMID:25257100
  14. Rachidi S, Sun S, Wu BX, Jones E, Drake RR, Ogretmen B, Cowart A, Clarke CJ, Hannun YA, Chiosis G, Liu B, Li Z Endoplasmic reticulum heat shock protein gp96 maintains liver homeostasis and promotes hepatocellular carcinogenesis. J Hepatol. 2014 Nov 22. pii: S0168-8278(14)00854-X. doi: 10.1016/j.jhep.2014.11.010. PMID:25463537
  15. God JM, Zhao D, Cameron CA, Amria S, Bethard JR, Haque A Disruption of HLA Class II Antigen Presentation in Burkitt Lymphoma: Implication of a 47 kDa Acid Labile Protein in CD4+ T Cell Recognition..Immunology. 2014 Mar 15. doi: 10.1111/imm.12281. [Epub ahead of print]PMID:24628049
  16. Drake RR, Kislinger T The proteomics of prostate cancer exosomes..Expert Rev Proteomics. 2014 Apr;11(2):167-77. doi: 10.1586/14789450.2014.890894. Epub 2014 Feb 25.
  17. Nyalwidhe JO, Betesh LR, Powers TW, Jones EE, White KY, Burch TC, Brooks J, Watson MT, Lance RS, Troyer DA, Semmes OJ, Mehta A, Drake RR Increased bisecting N-acetylglucosamine and decreased branched chain glycans of N-linked glycoproteins in expressed prostatic secretions associated with prostate cancer progression..Proteomics Clin Appl. 2013 Jun 17. doi: 10.1002/prca.201200134. [Epub ahead of print]PMID:23775902
  18. Nagel AK, Schilling M, Comte-Walters S, Berkaw MN, Ball LE. Identification of O-linked N-acetylglucosamine (O-GlcNAc)-modified osteoblast proteins by electron transfer dissociation tandem mass spectrometry reveals proteins critical for bone formation. Mol Cell Proteomics. 2013 Apr;12(4):945-55. doi: 10.1074/mcp.M112.026633. Epub 2013 Feb 26. PMID: 23443134
  19. Liu Y, Conaway L, Rutherford Bethard J, Al-Ayoubi AM, Thompson Bradley A, Zheng H, Weed SA, Eblen ST. Phosphorylation of the alternative mRNA splicing factor 45 (SPF45) by Clk1 regulates its splice site utilization, cell migration and invasion.Nucleic Acids Res. 2013 May 1;41(9):4949-62. doi: 10.1093/nar/gkt170. Epub 2013 Mar 21.PMID:23519612 [PubMed - in process]
  20. Roper S, Zemskova M, Neely BA, Martin A, Gao P, Jones EE, Kraft AS, Drake RR. Targeted Glycoprotein Enrichment and Identification in Stromal Cell Secretomes using Azido Sugar Metabolic Labeling. Proteomics Clin Appl. 2013 May 18. doi: 10.1002/prca.201300006. [Epub ahead of print] PMID: 23687070
  21. Principe S, Jones EE, Kim Y, Sinha A, Nyalwidhe JO, Brooks J, Semmes OJ, Troyer DA, Lance RS, Kislinger T, Drake RR.In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Proteomics. 2013 May;13(10-11):1667-71. doi: 10.1002/pmic.201200561. Epub 2013 Apr 23. PMID:23533145
  22. Beckham TH, Lu P, Jones EE, Marrison T, Lewis CS, Cheng JC, Ramshesh VK, Beeson G, Beeson CC, Drake RR, Bielawska A, Bielawski J, Szulc ZM, Ogretmen B, Norris JS, Liu X. LCL124, a cationic analog of ceramide, selectively induces pancreatic cancer cell death by accumulating in mitochondria. J Pharmacol Exp Ther. 2013 Jan;344(1):167-78. doi: 10.1124/jpet.112.199216. Epub 2012 Oct 18. PMID:23086228
 
 
 

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